MBON Publications

‘Omics and eDNA publications from the MBON Projects

Andruszkiewicz, E. A., H. A. Starks, F. P. Chavez, L. M. Sassoubre, B. A. Block, and A. B. Boehm. 2017. Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding. PLoS ONE 12:e0176343. https://doi.org/10.1371/journal.pone.0176343l

Biller, S.J., L.D. McDaniel, M. Breitbart, E. Rogers, J.H. Paul, S.W. Chisholm (2017). Membrane vesicles in seawater: heterogeneous DNA content and implications for viral abundance estimates. ISME Journal. 11: 394-404

Djurhuus, Anni, Kathleen Pitz, Natalie A. Sawaya, Jaimie Rojas-Márquez, Brianna Michaud, Enrique Montes, Frank Muller-Karger, and Mya Breitbart. 2018. Evaluation of marine zooplankton community structure through environmental DNA metabarcoding. Limnology and Oceanography: Methods. 10.1002/lom3.10237 9.

Djurhuus, Anni, J. Port, C. J. Closek, K. M. Yamahara, O. Romero-Maraccini, K.R. Walz, D. B. Goldsmith, R. Michisaki, M. Breitbart, A. B. Boehm, F. P. Chavez. 2017. Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels. Frontiers in Marine Science, 4, 314. doi: 10.3389/fmars.2017.00314

Goodwin, Kelly Dee, Frank Edgar Muller-Karger, Anni Djurhuus , Lisa Zeigler Allen, Andrew E. Allen, John P. McCrow, and Gabrielle Canonico Hyde. 2018 (in press). Chapter 32. Molecular Approaches for an Operational Marine Biodiversity Observation Network. In: World Seas: An Environmental Evaluation, Vol. III: Ecological Issues and Environmental Impacts. 2nd Edition. Charles Sheppard (editor). 12.

Goodwin, K.D., F.E. Muller-Karger, G. Canonico. Integrating marine omics into the marine biodiversity observation network (MBON) in support of the U.N. sustainable development goals (SDG) and agenda 2030. Proceedings of TDWG 1: e2052, doi: 10.3897/tdwgproceedings.1.20521 (2017).

Kacev, D., Gillett, D., Freire de Carvalho, A., Cash, C., Walther, S., Thompson, A., Thompson, L., Bowlin, N., Goodwin, K., Stein, E. 2018. Assessment of Ichthyoplankton Metabarcoding for Routine Monitoring. Southern California Coastal Water Research Project Technical Report 1031.

Lafferty, K.D., Benesh, K.C., Mahon, A.R., Jerde, C.L. and Lowe, C.G., 2018. Detecting southern California’s white sharks with environmental DNA. Frontiers in Marine Science, 5, pp.1-6.

Ryan P. Kelly, Collin J. Closek, James L. O’Donnell, James E. Kralj, Andrew O. Shelton, Jameal F. Samhouri (2017). Genetic and Manual Survey Methods Yield Different and Complementary Views of an Ecosystem. Frontiers in Marine Science, 3:283

Sassoubre, L. M., K. M. Yamahara, L. Gardner, B. Block, A. B. Boehm. 2016. Environmental DNA (eDNA) shedding and decay rates of three marine fish. Environmental Science & Technology, 50(19), 10456-10464

Sawaya, Natalie; Djurhuus, Anni; Closek, Collin; Hepner, Megan; Olesin, Emily; Visser, Lindsey; Kelble, Christopher; Hubbard, Katherine; and Breitbart, Mya, “Assessing Eukaryotic Biodiversity in the Florida Keys National Marine Sanctuary Through Environmental DNA Metabarcoding” (2019). Marine Science Faculty Publications. 651. https://scholarcommons.usf.edu/msc_facpub/651

Wear, E.K., Wilbanks, E.G., Nelson, C.E. and Carlson, C.A., 2018. Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton. Environmental Microbiology. doi.org/10.1111/1462- 2920.14091

Yamahara, Kevan M., Christina M. Preston, James Birch, Kristine Walz, Roman Marin III, Scott Jensen, Douglas Pargett, Brent Roman, William Ussler III, Yanwu Zhang, John Ryan, Brett Hobson, Brian Kieft, Ben Raanan, Kelly D. Goodwin, Francisco P. Chavez, and Christopher Scholin. 2019. In-situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle. Front. Mar. Sci.. doi: 10.3389/fmars.2019.00373